PlantCARE, a database of plant promoters and their cis

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PlantCARE, a database of plant promoters and their

2017-11-7  PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. Magali Lescot, Patrice D hais, Gert Thijs, Kathleen Marchal, Yves Moreau, Yves Van de Peer, Pierre Rouz and Stephane Rombauts.

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PlantCARE, a database of plant cis-acting regulatory ...

PlantCARE is a database of plant cis-acting regulatory elements, enhancers and repressors. Regulatory elements are represented by positional matrices, consensus sequences and individual sites on particular promoter sequences. Links to the EMBL, TRANSFAC and MEDLINE databases are

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PlantCARE, a database of plant cis-acting regulatory ...

2015-7-10  PlantCARE is a database of plant cis-acting regulatory elements, enhancers and repressors. Regulatory elements are represented by positional matrices, consensus sequences and individual sites on particular promoter sequences. Links to the EMBL, TRANSFAC and MEDLINE databases are provided when available. Data about the transcription sites are

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PlantCARE, a database of plant cis-acting regulatory ...

2002-1-1  PlantCARE is a database of plant cis-acting regulatory elements, enhancers and repressors. Regulatory elements are represented by positional matrices, consensus sequences and individual sites on particular promoter sequences.

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(PDF) PlantCARE, a database of plant cis-acting

By looking for over-represented oligonucleotide sequences, regulatory PlantCARE is a database of plant cis-acting regulatory elements can be found, which are shared by some of the

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基因家族分析7 顺式作用元件分析 - 简书

2019-4-12  PlantCARE, a database of plant promoters and their cis-acting regulatory elements:. bioinformatics.psb.ugent/webtools/plantcare/html/. 使用方法:Search for CARE —sequences—search. 邮箱查收,excel整理tab文件. 注意:有时候N多上传不了,重复几次,一次序列长

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New PLACE - dna.affrc.go.jp

New PLACE. PLACE is a database of motifs found in plant cis-acting regulatory DNA elements, which were collected from previously published reports. It originally covered vascular plants only, but we changed the policy in April 2006 (See the release note of PLACE 26.0). In addition to the reported motifs in the original publication, their ...

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PlantProm - Plant Promoter Database

A Database of Plant Promoter Sequences (Release 2009.02) PlantProm DB was initially developed as an annotated, non-redundant collection of proximal promoter sequences for RNA polymerase II with experimentally determined transcription start site (s), TSS, from various plant species.

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PlantCARE, a plant cis-acting regulatory element database

2017-12-20  established plant cis-acting regulatory elements. This under-representation of plant data makes these systems not efficiently applicable to plant promoter sequences. We thus began to collect as much information as possible about plant promoters with their cis-acting regulatory elements and to organize them in a local relational database.

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[PDF] PlantCARE, a database of plant cis-acting

PlantCARE is a database of plant cis-acting regulatory elements, enhancers and repressors. Regulatory elements are represented by positional matrices, consensus sequences and individual sites on particular promoter sequences. Links to the EMBL, TRANSFAC and MEDLINE databases are provided when available. Data about the transcription sites are extracted mainly from the literature, supplemented ...

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PlantCARE, a plant cis-acting regulatory element

PlantCARE is a database of plant cis-acting regulatory elements, enhancers and repressors. Besides the transcription motifs found on a sequence, it also offers a link to the EMBL entry that contains the full gene sequence as well as a description of the conditions in which a motif becomes functional.

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Genomic Analysis of MicroRNA Promoters and Their

2010-11-1  PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. Nucleic Acids Research, 30, 325-327. Liu H H, Tian X, Li Y J, Wu C A, Zheng C C. 2008.

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New PLACE - dna.affrc.go.jp

New PLACE. PLACE is a database of motifs found in plant cis-acting regulatory DNA elements, which were collected from previously published reports. It originally covered vascular plants only, but we changed the policy in April 2006 (See the release note of PLACE 26.0). In addition to the reported motifs in the original publication, their ...

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PlantProm - Plant Promoter Database

PlantProm DB was initially developed as an annotated, non-redundant collection of proximal promoter sequences for RNA polymerase II with experimentally determined transcription start site(s), TSS, from various plant species. The first release of DB, 2002.01, developed by the Department of Computer Science at Royal Holloway, University of London, in collaboration with Softberry Inc. (USA), is ...

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基因家族分析7 顺式作用元件分析 - 简书

2019-4-12  顺式作用元件 (cis-acting element)存在于基因旁侧序列中能影响基因表达的序列。. 顺式作用元件包括启动子、增强子、调控序列和可诱导元件等,它们的作用是参与基因表达的调控。. 顺式作用元件本身不编码任何蛋白质,仅仅提供一个作用位点,要与反式作用因子 ...

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PlantProm - Plant Promoter Database

PlantProm DB was initially developed as an annotated, non-redundant collection of proximal promoter sequences for RNA polymerase II with experimentally determined transcription start site(s), TSS, from various plant species. The first release of DB, 2002.01, developed by the Department of Computer Science at Royal Holloway, University of London, in collaboration with Softberry Inc. (USA), is ...

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Plant Promoters: Characterization and Applications in ...

2017-3-11  Plant growth, development and adaptation are regulated by gene expression, in which promoters, the cis -acting elements that initiate transcription, play a pivotal role. This chapter on plant promoter characterization and applications is split into three major sections. The first section describes the structural features of plant promoters ...

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Genome Annotation Tools: Promoters-Cis Elements

A database containing orthologous clusters of promoters from Homo sapiens, Arabidopsis thaliana and other organisms. PlantCare Database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences.

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Genomic Analysis of MicroRNA Promoters and Their

2010-11-1  PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. Nucleic Acids Research, 30, 325-327. Liu H H, Tian X, Li Y J, Wu C A, Zheng C C. 2008.

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ppdb: a plant promoter database

plant cis-element database, and a list of promoters containing the regulatory sequence. BACKGROUND A promoter database can be generated from a combina-tion of genome sequence, information of promoter positions and a list of cis-regulatory elements. Currently a major restriction on the quality of a promoter database

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New PLACE - dna.affrc.go.jp

New PLACE. PLACE is a database of motifs found in plant cis-acting regulatory DNA elements, which were collected from previously published reports. It originally covered vascular plants only, but we changed the policy in April 2006 (See the release note of PLACE 26.0). In addition to the reported motifs in the original publication, their ...

Get price

PlantProm - Plant Promoter Database

PlantProm DB was initially developed as an annotated, non-redundant collection of proximal promoter sequences for RNA polymerase II with experimentally determined transcription start site(s), TSS, from various plant species. The first release of DB, 2002.01, developed by the Department of Computer Science at Royal Holloway, University of London, in collaboration with Softberry Inc. (USA), is ...

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Plant Promoters: An Approach of Structure and

2013-10-12  According to the PlantCARE database, other cis-elements are present in promoters but are not common, as mentioned above. Representative examples include the L and I boxes, which have TCTCACCAACC and CTCTTATGCT as their consensus sequences at +58 to +68 bp and +95 to +103 bp from the TSS positions, respectively; ARE, an essential element for the ...

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Transcriptional Elements - GARNet

2021-5-25  Use Plant CARE to run sophisticated queries on the data, like looking for sites linked to a specific function, and submit a sequence to a program which will look for transcription sites known by PlantCARE. From the abstract: PlantCARE is a database of plant cis-acting regulatory elements, enhancers and repressors. Regulatory elements are ...

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植物miRNA启动子研究进展

[46] Lescot M, Dehais P, Thijs G, et al. PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. Nucleic

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Plant Promoters: Characterization and Applications in ...

2017-3-11  Abstract. Plant growth, development and adaptation are regulated by gene expression, in which promoters, the cis-acting elements that initiate transcription, play a pivotal role.This chapter on plant promoter characterization and applications is split into three major sections.

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白桦 BpZFP 4基因启动子克隆和逆境响应元件功能分析 ...

2019-6-9  白桦 BpZFP 4基因启动子克隆和逆境响应元件功能分析. 秦琳琳, 张曦, 姜骋, 李莉. 林木遗传育种国家重点实验室, 东北林业大学, 哈尔滨 150040. 收稿日期: 2019-06-09 出版日期: 2019-11-05 发布日期: 2019-11-16. 通讯李莉 E-mail:[email protected] 作者简介: 秦琳琳 (1992-),硕士 ...

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